recipe perl-snap

SNAP calculates pairwise synonymous and nonsynonymous distances according to the Nei and Gojobori method for an alignment in table format.

Homepage:

https://www.hiv.lanl.gov/content/sequence/SNAP/SNAP.html

License:

Custom OSS

Recipe:

/perl-snap/meta.yaml

package perl-snap

(downloads) docker_perl-snap

versions:

2.1.1-1,  2.1.1-0

depends perl:

>=5.32.1,<6.0a0 *_perl5

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install perl-snap

and update with::

   mamba update perl-snap

To create a new environment, run:

mamba create --name myenvname perl-snap

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/perl-snap:<tag>

(see `perl-snap/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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