recipe perl-velvetoptimiser

Automatically optimise three of Velvet's assembly parameters.

Homepage:

https://github.com/tseemann/VelvetOptimiser

License:

GPLv2

Recipe:

/perl-velvetoptimiser/meta.yaml

Links:

biotools: velvetoptimiser

package perl-velvetoptimiser

versions:

2.2.6-1,  2.2.6-0,  2.2.5-1,  2.2.5-0

depends perl:

>=5.32.1,<6.0a0 *_perl5

depends perl-bioperl:

>=1.7

depends velvet:

>=0.7.51

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install perl-velvetoptimiser

and update with::

   mamba update perl-velvetoptimiser

To create a new environment, run:

mamba create --name myenvname perl-velvetoptimiser

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/perl-velvetoptimiser:<tag>

(see `perl-velvetoptimiser/tags`_ for valid values for ``<tag>``)

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Link to this page

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