recipe pftools

A generalized profile syntax for biomolecular sequence motifs and its function in automatic sequence interpretation.

Homepage:

https://web.expasy.org/pftools/

Developer docs:

https://github.com/sib-swiss/pftools3

License:

GPL / GPLv2

Recipe:

/pftools/meta.yaml

package pftools

versions:

3.2.12-4,  3.2.12-3,  3.2.12-2,  3.2.12-1,  3.2.12-0,  3.2.11-2,  3.2.11-1,  3.2.11-0,  3.2.10-0, 

3.2.12-4,  3.2.12-3,  3.2.12-2,  3.2.12-1,  3.2.12-0,  3.2.11-2,  3.2.11-1,  3.2.11-0,  3.2.10-0,  2.3.5-1,  2.3.5-0

depends libgcc-ng:

>=12

depends libgfortran-ng:

depends libgfortran5:

>=12.3.0

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<2.0a0

depends pcre2:

>=10.43,<10.44.0a0

depends perl:

>=5.32.1,<5.33.0a0 *_perl5

depends perl-file-slurp:

9999.32.*

depends r-base:

>=4.3,<4.4.0a0

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pftools

and update with::

   mamba update pftools

To create a new environment, run:

mamba create --name myenvname pftools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pftools:<tag>

(see `pftools/tags`_ for valid values for ``<tag>``)

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