recipe pggb

This pangenome graph construction pipeline renders a collection of sequences into a pangenome graph (in the variation graph model).

Homepage:

https://github.com/pangenome/pggb

License:

MIT

Recipe:

/pggb/meta.yaml

package pggb

Versions:

0.5.3-2,  0.5.3-1,  0.5.3-0,  0.5.2-0,  0.5.1-1,  0.5.1-0,  0.5.0-0,  0.4.1-0,  0.4.0-1, 

0.5.3-2,  0.5.3-1,  0.5.3-0,  0.5.2-0,  0.5.1-1,  0.5.1-0,  0.5.0-0,  0.4.1-0,  0.4.0-1,  0.4.0-0,  0.3.1-1,  0.3.1-0,  0.3.0-1,  0.3.0-0,  0.2.0-0

Depends:

• bc

• bcftools

• gfaffix >=0.1.4

• gsl 2.7.0.*

• idna <3,>=2.5

• multiqc >=1.13

• odgi >=0.8.2

• pigz

• python-igraph >=0.10.3

• seqwish >=0.7.8

• smoothxg >=0.6.8

• tabix

• time

• vg 1.40.0.*

• wfmash >=0.10.2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install pggb

and update with:

conda update pggb

or use the docker container:

docker pull quay.io/biocontainers/pggb:<tag>

(see pggb/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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