recipe pgscatalog.core

Core tools for working with polygenic scores (PGS) and the PGS Catalog

Homepage:

https://github.com/PGScatalog/pygscatalog/

License:

Apache-2.0

Recipe:

/pgscatalog.core/meta.yaml

package pgscatalog.core

versions:

0.3.3-0,  0.3.2-0,  0.3.1-0,  0.2.2-0,  0.2.1-0

depends httpx:

>=0.26.0,<0.27.0

depends natsort:

>=8.4.0,<9.0.0

depends pydantic:

>=2.9.0,<3.0.0

depends pyliftover:

>=0.4.1,<0.5.0

depends python:

>=3.10

depends python-zlib-ng:

depends tenacity:

>=8.2.3,<9.0.0

depends tqdm:

>=4.66.1,<5.0.0

depends xopen:

>=1.8.0,<2.0.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pgscatalog.core

and update with::

   mamba update pgscatalog.core

To create a new environment, run:

mamba create --name myenvname pgscatalog.core

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pgscatalog.core:<tag>

(see `pgscatalog.core/tags`_ for valid values for ``<tag>``)

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