recipe pgx-variant-tools

This library contains various methods and utilities for the calling and manipulation of normalized variants.

Homepage:

https://github.com/LUMC/pgx-variant-tools

License:

MIT / MIT

Recipe:

/pgx-variant-tools/meta.yaml

package pgx-variant-tools

versions:

0.0.5-0,  0.0.4-0,  0.0.3-0,  0.0.2-2,  0.0.2-1,  0.0.2-0

depends biopython:

depends click:

depends cyvcf2:

depends numpy:

depends pyinterval:

depends python:

>=3.6

depends python-edlib:

depends requests:

depends suds-jurko:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pgx-variant-tools

and update with::

   mamba update pgx-variant-tools

To create a new environment, run:

mamba create --name myenvname pgx-variant-tools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pgx-variant-tools:<tag>

(see `pgx-variant-tools/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pgx-variant-tools/README.html)