- recipe phables
Phables: from fragmented assemblies to high-quality bacteriophage genomes
- Homepage:
- Documentation:
- License:
MIT / MIT
- Recipe:
Phables resolves bacteriophage genomes using phage bubbles in viral metagenomic data.
- package phables¶
- versions:
1.4.1-1,1.4.1-0,1.4.0-0,1.3.3-0,1.3.2-0,1.3.1-0,1.3.0-0,1.2.2-0,1.2.1-0,1.4.1-1,1.4.1-0,1.4.0-0,1.3.3-0,1.3.2-0,1.3.1-0,1.3.0-0,1.2.2-0,1.2.1-0,1.2.0-0,1.1.0-0,1.0.0-0,0.2.0-0,0.1.1-0,0.1.0-0,0.1.0b7-0- depends click:
>=8.1.3- depends jinja2:
>=3.0.2- depends mamba:
<1.4.2- depends metasnek:
>=0.0.5- depends python:
>=3.10,<3.11.0a0- depends python_abi:
3.10.* *_cp310- depends pyyaml:
>=6.0- depends snakemake-minimal:
>=7.14.0- depends snaketool-utils:
>=0.0.3- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install phables and update with:: mamba update phables
To create a new environment, run:
mamba create --name myenvname phables
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/phables:<tag> (see `phables/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/phables/README.html)
