recipe phables

Phables: from fragmented assemblies to high-quality bacteriophage genomes

Homepage:

https://github.com/Vini2/phables

Documentation:

https://phables.readthedocs.io/

License:

MIT / MIT

Recipe:

/phables/meta.yaml

Phables resolves bacteriophage genomes using phage bubbles in viral metagenomic data.

package phables

(downloads) docker_phables

versions:
1.4.1-1,  1.4.1-0,  1.4.0-0,  1.3.3-0,  1.3.2-0,  1.3.1-0,  1.3.0-0,  1.2.2-0,  1.2.1-0, 

1.4.1-1,  1.4.1-0,  1.4.0-0,  1.3.3-0,  1.3.2-0,  1.3.1-0,  1.3.0-0,  1.2.2-0,  1.2.1-0,  1.2.0-0,  1.1.0-0,  1.0.0-0,  0.2.0-0,  0.1.1-0,  0.1.0-0,  0.1.0b7-0

depends click:

>=8.1.3

depends jinja2:

>=3.0.2

depends mamba:

<1.4.2

depends metasnek:

>=0.0.5

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends pyyaml:

>=6.0

depends snakemake-minimal:

>=7.14.0

depends snaketool-utils:

>=0.0.3

requirements:

additional platforms:
linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install phables

and update with::

   mamba update phables

To create a new environment, run:

mamba create --name myenvname phables

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/phables:<tag>

(see `phables/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/phables/README.html)