- recipe phabox
Virus identification and analysis tool set
- Homepage:
- Documentation:
- License:
OTHER / AFL-3.0
- Recipe:
- Links:
doi: 10.1093/bioadv/vbad101, biotools: phabox
- package phabox¶
- versions:
2.1.9-0,2.1.8-0,2.1.7-0,2.1.6-0,2.1.5-0,2.1.4-0,2.1.0-0,2.0.0-0- depends accelerate:
>=1.0.1- depends biopython:
>=1.84- depends blast:
>=2.16.0- depends datasets:
>=3- depends diamond:
0.9.14.*- depends fasttree:
>=2.1.11- depends kcounter:
>=0.1.1- depends mafft:
>=7.525- depends mcl:
>=22.282- depends networkx:
>=3.4- depends numpy:
>=1.26- depends pandas:
>=2- depends prodigal-gv:
>=2.11.0- depends pyarrow:
>=16- depends python:
>=3.8- depends pytorch:
>=2.4- depends scipy:
>=1.14- depends seaborn-base:
>=0.13.2- depends transformers:
>=4- requirements:
- additional platforms:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install phabox and update with:: mamba update phabox
To create a new environment, run:
mamba create --name myenvname phabox
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/phabox:<tag> (see `phabox/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/phabox/README.html)
