recipe phastaf

Identify phage regions in bacterial genomes for masking purposes

Homepage:

https://github.com/tseemann/phastaf

License:

GPL / GPLv3

Recipe:

/phastaf/meta.yaml

package phastaf

versions:

0.1.0-1,  0.1.0-0

depends any2fasta:

>=0.4

depends bedtools:

>=2.0

depends coreutils:

depends diamond:

>=0.9

depends perl:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install phastaf

and update with::

   mamba update phastaf

To create a new environment, run:

mamba create --name myenvname phastaf

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/phastaf:<tag>

(see `phastaf/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/phastaf/README.html)