recipe phate

PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.

Homepage:

https://github.com/KrishnaswamyLab/PHATE

Documentation:

https://phate.readthedocs.io

License:

GPL / GPL-2.0

Recipe:

/phate/meta.yaml

Links:

doi: 10.1038/s41587-019-0336-3

package phate

(downloads) docker_phate

versions:

1.0.11-0,  1.0.10-0,  1.0.9-0,  1.0.8-0,  1.0.7-0,  1.0.4-0,  1.0.3-0,  1.0.2-0,  0.4.5-0

depends deprecated:

depends future:

depends graphtools:

>=1.5.3

depends matplotlib-base:

>=3.0

depends numpy:

>=1.16.0

depends python:

>=3.5

depends s_gd2:

>=1.5

depends scikit-learn:

>=0.20.0

depends scipy:

>=1.1.0

depends scprep:

>=0.11.1

depends tasklogger:

>=1.0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install phate

and update with::

   mamba update phate

To create a new environment, run:

mamba create --name myenvname phate

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/phate:<tag>

(see `phate/tags`_ for valid values for ``<tag>``)

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Link to this page

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