recipe phenograph

Graph-based clustering for high-dimensional single-cell data.

Homepage:

https://github.com/dpeerlab/PhenoGraph

Documentation:

https://github.com/dpeerlab/PhenoGraph/blob/v1.5.7/README.md

License:

MIT / MIT

Recipe:

/phenograph/meta.yaml

Links:

doi: 10.1016/j.cell.2015.05.047

package phenograph

(downloads) docker_phenograph

versions:

1.5.7-0

depends leidenalg:

>=0.8.2

depends numpy:

>=1.12

depends psutil:

>4

depends python:

>=3.6

depends scikit-learn:

>=0.17

depends scipy:

>=1.5.1

depends setuptools:

>=18.0.1

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install phenograph

and update with::

   mamba update phenograph

To create a new environment, run:

mamba create --name myenvname phenograph

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/phenograph:<tag>

(see `phenograph/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/phenograph/README.html)