recipe phist

Phage-Host Interaction Search Tool.

Homepage:

https://github.com/refresh-bio/PHIST

License:

GPL-3 / GPL-3

Recipe:

/phist/meta.yaml

Links:

doi: 10.1093/bioinformatics/btab837

package phist

versions:

1.0.0-0

depends kmer-db:

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.12,<1.3.0a0

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends zlib:

>=1.2.12,<1.3.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install phist

and update with::

   mamba update phist

To create a new environment, run:

mamba create --name myenvname phist

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/phist:<tag>

(see `phist/tags`_ for valid values for ``<tag>``)

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