- recipe phold
Phage annotation using protein structures
- Homepage:
- Documentation:
- License:
MIT / MIT
- Recipe:
- package phold¶
- versions:
0.2.0-0,0.1.4-0,0.1.3-0,0.1.2-0,0.1.1-0- depends alive-progress:
>=3.0.1- depends biopython:
>=1.76- depends click:
>=8.0.0- depends datasets:
>=2.15- depends foldseek:
9.427df8a- depends h5py:
>=3.5- depends loguru:
>=0.5.3- depends numpy:
>=1.20- depends pandas:
>=1.4.2- depends pyarrow:
>=14.0.0- depends pycirclize:
>=0.3.1- depends pyrodigal-gv:
>=0.3.1- depends python:
>=3.8,<3.12- depends pytorch:
>=2.1.2- depends pyyaml:
>=6.0- depends requests:
>=2.25- depends sentencepiece:
>=0.1.99- depends transformers:
>=4.34- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install phold and update with:: mamba update phold
To create a new environment, run:
mamba create --name myenvname phold
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/phold:<tag> (see `phold/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/phold/README.html)
