recipe phyloacc

Bayesian estimation of substitution rate shifts in non-coding regions

Homepage:

https://phyloacc.github.io/

Documentation:

https://phyloacc.github.io/readme.html

Developer docs:

https://github.com/phyloacc/PhyloAcc

License:

GPL3 / GPL-3.0-or-later

Recipe:

/phyloacc/meta.yaml

Bayesian estimation of substitution rate shifts in non-coding regions

package phyloacc

versions:

2.3.1-1,  2.3.1-0,  2.2.0-2,  2.2.0-1,  2.2.0-0,  2.1.1-0,  2.1.0-0,  2.0.0-2,  2.0.0-1, 

2.3.1-1,  2.3.1-0,  2.2.0-2,  2.2.0-1,  2.2.0-0,  2.1.1-0,  2.1.0-0,  2.0.0-2,  2.0.0-1,  2.0.0-0,  1.1.1-0,  1.1.0-0

depends _openmp_mutex:

>=4.5

depends armadillo:

>=12.8,<13.0a0

depends biopython:

>=1.79

depends blis:

depends gsl:

>=2.7,<2.8.0a0

depends libgcc-ng:

>=12

depends libgomp:

depends liblapack:

>=3.9.0,<4.0a0

depends libstdcxx-ng:

>=12

depends matplotlib-base:

>=3.5

depends numpy:

>=1.22

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends snakemake-minimal:

>=7.3

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install phyloacc

and update with::

   mamba update phyloacc

To create a new environment, run:

mamba create --name myenvname phyloacc

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/phyloacc:<tag>

(see `phyloacc/tags`_ for valid values for ``<tag>``)

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