recipe phylocsf

Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions

Homepage:

https://github.com/mlin/PhyloCSF/wiki

License:

AGPL-3.0

Recipe:

/phylocsf/meta.yaml

Links:

biotools: phyloCSF

package phylocsf

(downloads) docker_phylocsf

versions:

1.0.1-1,  1.0.1-0

depends gsl:

>=2.5,<2.6.0a0

depends libgcc-ng:

>=7.3.0

depends libstdcxx-ng:

>=7.3.0

depends ocaml:

>=4.6.1,<5.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install phylocsf

and update with::

   mamba update phylocsf

To create a new environment, run:

mamba create --name myenvname phylocsf

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/phylocsf:<tag>

(see `phylocsf/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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