recipe phyloflash

phyloFlash is a pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.

Homepage

https://github.com/HRGV/phyloFlash

License

GPL / GPLv3

Recipe

/phyloflash/meta.yaml

package phyloflash

Versions

3.4-1,  3.4-0,  3.3b4-0,  3.3b3-0,  3.3b2-0,  3.3b1-1,  3.3b1-0,  3.0b1-1,  3.0b1-0, 

3.4-1,  3.4-0,  3.3b4-0,  3.3b3-0,  3.3b2-0,  3.3b1-1,  3.3b1-0,  3.0b1-1,  3.0b1-0,  2.0beta6-0

Depends

• bbmap

• bedtools

• emirge

• mafft

• perl >=5.13.2

• pigz

• r-base

• r-ggdendro

• r-ggplot2

• r-gtable

• r-optparse

• r-reshape2

• samtools

• spades

• vsearch

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install phyloflash

and update with:

conda update phyloflash

or use the docker container:

docker pull quay.io/biocontainers/phyloflash:<tag>

(see phyloflash/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/phyloflash/README.html)