recipe phyloflash

phyloFlash is a pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.

Homepage:

https://github.com/HRGV/phyloFlash

License:

GPL / GPLv3

Recipe:

/phyloflash/meta.yaml

package phyloflash

Versions:

3.4.2-1,  3.4.2-0,  3.4.1-0,  3.4-1,  3.4-0,  3.3b4-0,  3.3b3-0,  3.3b2-0,  3.3b1-1, 

3.4.2-1,  3.4.2-0,  3.4.1-0,  3.4-1,  3.4-0,  3.3b4-0,  3.3b3-0,  3.3b2-0,  3.3b1-1,  3.3b1-0,  3.0b1-1,  3.0b1-0,  2.0beta6-0

Depends:

• bbmap

• bedtools

• emirge

• mafft

• perl >=5.13.2

• pigz

• r-base >=4.0.0

• r-ggdendro

• r-ggplot2 >=3.3.0

• r-gtable

• r-optparse

• r-reshape2

• samtools >=1.12

• spades

• vsearch >=2.5.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install phyloflash

and update with:

conda update phyloflash

or use the docker container:

docker pull quay.io/biocontainers/phyloflash:<tag>

(see phyloflash/tags for valid values for <tag>)

Download stats

Link to this page

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