recipe phylorank

PhyloRank provides functionality for calculating the relative evolutionary divergence (RED) of taxa in a tree and for finding the best placement of taxonomic labels in a tree.

Homepage:

https://github.com/dparks1134/PhyloRank

License:

GPL3 / GNU General Public v3 (GPLv3)

Recipe:

/phylorank/meta.yaml

package phylorank

versions:

0.1.12-0,  0.1.11-0,  0.1.10-0,  0.1.9-0,  0.1.8-0,  0.1.6-0,  0.1.3-0,  0.1.2-0,  0.1.1-0, 

0.1.12-0,  0.1.11-0,  0.1.10-0,  0.1.9-0,  0.1.8-0,  0.1.6-0,  0.1.3-0,  0.1.2-0,  0.1.1-0,  0.1.0-0,  0.0.43-0

depends biolib:

>=0.1.0

depends dendropy:

>=4.1.0

depends jinja2:

>=2.7.3

depends matplotlib-base:

<3.5.0

depends mpld3:

>=0.5.2

depends numpy:

depends python:

>=3.6

depends scipy:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install phylorank

and update with::

   mamba update phylorank

To create a new environment, run:

mamba create --name myenvname phylorank

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/phylorank:<tag>

(see `phylorank/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/phylorank/README.html)