recipe phylowgs

Application for inferring subclonal composition and evolution from whole-genome sequencing data

Homepage:

https://github.com/morrislab/phylowgs

License:

GPLv3

Recipe:

/phylowgs/meta.yaml

package phylowgs

versions:

20181105-8,  20181105-7,  20181105-6,  20181105-5,  20181105-4,  20181105-3,  20181105-2,  20181105-1,  20181105-0, 

20181105-8,  20181105-7,  20181105-6,  20181105-5,  20181105-4,  20181105-3,  20181105-2,  20181105-1,  20181105-0,  20180317-2,  20180317-1,  20180317-0,  20150714-1

depends ete2:

depends gsl:

>=2.7,<2.8.0a0

depends libblas:

>=3.9.0,<4.0a0

depends libcblas:

>=3.9.0,<4.0a0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends numpy:

depends python:

>=2.7,<2.8.0a0

depends python_abi:

2.7.* *_cp27mu

depends pyvcf:

depends scipy:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install phylowgs

and update with::

   mamba update phylowgs

To create a new environment, run:

mamba create --name myenvname phylowgs

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/phylowgs:<tag>

(see `phylowgs/tags`_ for valid values for ``<tag>``)

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Render an badge with the following MarkDown:

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