recipe phylowgs

Application for inferring subclonal composition and evolution from whole-genome sequencing data

Homepage

https://github.com/morrislab/phylowgs

License

GPLv3

Recipe

/phylowgs/meta.yaml

package phylowgs

(downloads) docker_phylowgs

Versions

20181105-0, 20180317-2, 20180317-1, 20180317-0, 20150714-1

Depends ete2

Depends gsl

>=2.4,<2.5.0a0

Depends libgcc-ng

>=7.3.0

Depends numpy

Depends openblas

>=0.3.3,<0.3.4.0a0

Depends python

>=2.7,<2.8.0a0

Depends pyvcf

Depends scipy

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install phylowgs

and update with:

conda update phylowgs

or use the docker container:

docker pull quay.io/biocontainers/phylowgs:<tag>

(see phylowgs/tags for valid values for <tag>)