recipe phyml

Phylogenetic estimation using (Maximum) Likelihood

Homepage:

http://www.atgc-montpellier.fr/phyml/

Developer docs:

https://github.com/stephaneguindon/phyml/

License:

GPL / GPL-3.0-only

Recipe:

/phyml/meta.yaml

Links:

biotools: phyml, doi: 10.1093/sysbio/syq010

PhyML is a software that estimates maximum likelihood phylogenies from alignments of nucleotide or amino acid sequences. The main strength of PhyML lies in the large number of substitution models coupled to various options to search the space of phylogenetic tree topologies, going from very fast and efficient methods to slower but generally more accurate approaches. PhyML was designed to process moderate to large data sets. In theory, alignments with up to 4,000 sequences 2,000,000 character-long can be processed. PhyML can process data sets made of multiple genes and fit sophisticated substitution models with heterogeneous components across partition elements.

package phyml

Versions:

3.3.20211231-2,  3.3.20211231-1,  3.3.20211231-0,  3.3.20200621-2,  3.3.20200621-1,  3.3.20200621-0,  3.3.20190909-1,  3.3.20190909-0,  3.3.20190908-0, 

3.3.20211231-2,  3.3.20211231-1,  3.3.20211231-0,  3.3.20200621-2,  3.3.20200621-1,  3.3.20200621-0,  3.3.20190909-1,  3.3.20190909-0,  3.3.20190908-0,  3.3.20190321-1,  3.3.20190321-0,  3.3.20180621-0,  3.3.20170530-0,  3.2.0-4,  3.2.0-3,  3.2.0-2,  3.2.0-0

Depends:

• libgcc-ng >=12

• openmpi >=4.1.5,<5.0a0

Required By:

• arb-bio

• rappas

• funannotate

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install phyml

and update with:

conda update phyml

or use the docker container:

docker pull quay.io/biocontainers/phyml:<tag>

(see phyml/tags for valid values for <tag>)

Download stats

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