recipe phytop

Phytop: A tool for visualizing and recognizing signals of incomplete lineage sorting and hybridization using species trees output from ASTRAL

Homepage:

https://github.com/zhangrengang/phytop/

License:

GPL / GPL-3.0-or-later

Recipe:

/phytop/meta.yaml

package phytop

versions:

0.3-0

depends biopython:

depends ete3:

depends lazy-property:

depends matplotlib-base:

depends networkx:

depends numpy:

depends python:

>=3.8

depends scipy:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install phytop

and update with::

   mamba update phytop

To create a new environment, run:

mamba create --name myenvname phytop

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/phytop:<tag>

(see `phytop/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/phytop/README.html)