recipe picard

Java tools for working with NGS data in the BAM format

Homepage

http://broadinstitute.github.io/picard/

Developer docs

https://github.com/broadinstitute/picard

License

MIT / MIT

Recipe

/picard/meta.yaml

Java tools for working with NGS data in the BAM format. This package depends on 'r-base' because Picard requires R to run some of its metrics commands. The 'picard-slim' package offers an installation of Picard without the 'r-base' dependency.

package picard

(downloads) docker_picard

Versions
2.23.3-02.23.2-02.23.1-02.23.0-02.22.9-02.22.8-02.22.7-02.22.6-02.22.5-0

2.23.3-02.23.2-02.23.1-02.23.0-02.22.9-02.22.8-02.22.7-02.22.6-02.22.5-02.22.4-02.22.3-02.22.2-02.22.1-02.22.0-02.21.9-02.21.8-02.21.7-02.21.6-02.21.5-02.21.4-02.21.3-02.21.2-12.21.2-02.21.1-02.20.8-02.20.7-02.20.6-02.20.5-02.20.4-12.20.4-02.20.3-02.20.2-02.20.1-02.20.0-02.19.2-02.19.1-02.19.0-02.18.29-02.18.27-02.18.26-02.18.25-02.18.23-02.18.22-02.18.21-02.18.20-02.18.17-02.18.16-02.18.15-02.18.14-02.18.13-02.18.12-02.18.11-02.18.10-02.18.9-02.18.7-22.18.7-02.18.6-02.18.5-02.18.4-02.18.3-02.18.2-02.18.1-02.18.0-02.17.11-02.17.10-02.17.8-02.17.6-02.17.5-02.17.4-02.17.3-02.17.2-02.17.0-02.16.0-02.15.0-02.14.1-02.14-02.13-12.13-02.11.0-02.10.6-02.9.2-22.9.2-12.9.2-02.9.0-02.7.1-22.7.1-12.7.1-02.5.0-22.5.0-12.5.0-02.3.0-02.0.1-12.0.1-01.141-51.141-41.141-31.141-11.141-01.139-01.126-51.126-41.126-31.126-21.97-01.56-11.56-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install picard

and update with:

conda update picard

or use the docker container:

docker pull quay.io/biocontainers/picard:<tag>

(see picard/tags for valid values for <tag>)