recipe picrust

PICRUSt: Phylogenetic Investigation of Communities by Reconstruction of Unobserved States

Homepage

http://picrust.github.com

License

GPL-3.0

Recipe

/picrust/meta.yaml

package picrust

(downloads) docker_picrust

Versions

1.1.3-2, 1.1.3-1, 1.1.3-0, 1.1.2-0, 1.1.1-0, 1.1.0-0, 1.0.1-0

Depends biom-format

>=2.1.4,<2.2.0

Depends cogent

>=1.5.3

Depends future

>=0.16

Depends h5py

>=1.7.0

Depends numpy

>=1.5.1

Depends python

>=2.7,<2.8.0a0

Depends r-ape

>=5.0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install picrust

and update with:

conda update picrust

or use the docker container:

docker pull quay.io/biocontainers/picrust:<tag>

(see picrust/tags for valid values for <tag>)

Notes

PICRUST requires a set of large pre-calculated data files. PICRUST contains a script, “download_picrust_files.py”, which downloads the data in the proper location, and which can be run after PICRUST has been installed.