recipe picrust

PICRUSt: Phylogenetic Investigation of Communities by Reconstruction of Unobserved States

Homepage:

http://picrust.github.com

License:

GPL-3.0

Recipe:

/picrust/meta.yaml

package picrust

(downloads) docker_picrust

versions:

1.1.4-1,  1.1.4-0,  1.1.3-2,  1.1.3-1,  1.1.3-0,  1.1.2-0,  1.1.1-0,  1.1.0-0,  1.0.1-0

depends biom-format:

>=2.1.4,<2.2.0

depends cogent:

>=1.5.3

depends future:

>=0.16

depends h5py:

>=2.7.1

depends numpy:

depends python:

2.7.*

depends r-ape:

>=5.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install picrust

and update with::

   mamba update picrust

To create a new environment, run:

mamba create --name myenvname picrust

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/picrust:<tag>

(see `picrust/tags`_ for valid values for ``<tag>``)

Notes

PICRUSt requires a set of large pre-calculated data files. PICRUSt contains a script, "download_picrust_files.py", which downloads the data in the proper location, and which can be run after PICRUSt has been installed.

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/picrust/README.html)