recipe pipelign

A pipeline for automated multiple sequence alignment, particularly of viral sequences.

Homepage

https://github.com/asmmhossain/pipelign/

License

MIT

Recipe

/pipelign/meta.yaml

package pipelign

Versions

0.2-2,  0.2-1,  0.2-0

Depends

• biopython

• cd-hit

• ete3

• hmmer

• iqtree

• joblib

• mafft

• parallel

• python >=3

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pipelign

and update with:

conda update pipelign

or use the docker container:

docker pull quay.io/biocontainers/pipelign:<tag>

(see pipelign/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pipelign/README.html)