recipe pipits

PIPITS: An automated pipeline for analyses of fungal internal transcribed spacer (ITS) sequences from the Illumina sequencing platform

Homepage

https://github.com/hsgweon/pipits

License

GPL3 / GNU General Public License v3.0

Recipe

/pipits/meta.yaml

package pipits

(downloads) docker_pipits

Versions

2.4-0, 2.3-4, 2.3-3, 2.3-2, 2.3-1, 2.3-0, 2.2-2, 2.2-1, 2.1-5, 2.1-3, 2.1-2, 2.1-1, 2.0-1, 2.0-0

Depends biom-format

Depends fastx_toolkit

Depends hmmer

Depends itsx

Depends numpy

Depends pandas

Depends pispino

>=1.1

Depends progressbar2

Depends python

>=3

Depends rdptools

Depends requests

Depends seqkit

Depends vsearch

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pipits

and update with:

conda update pipits

or use the docker container:

docker pull quay.io/biocontainers/pipits:<tag>

(see pipits/tags for valid values for <tag>)