recipe pipits

PIPITS: An automated pipeline for analyses of fungal internal transcribed spacer (ITS) sequences from the Illumina sequencing platform

Homepage:

https://github.com/hsgweon/pipits

License:

GPL3 / GNU General Public License v3.0

Recipe:

/pipits/meta.yaml

package pipits

Versions:

3.0-0,  2.8-0,  2.7-0,  2.6-0,  2.5-0,  2.4-0,  2.3-4,  2.3-3,  2.3-2, 

3.0-0,  2.8-0,  2.7-0,  2.6-0,  2.5-0,  2.4-0,  2.3-4,  2.3-3,  2.3-2,  2.3-1,  2.3-0,  2.2-2,  2.2-1,  2.1-5,  2.1-3,  2.1-2,  2.1-1,  2.0-1,  2.0-0

Depends:

• biom-format

• fastx_toolkit

• hmmer

• itsx

• numpy

• pandas

• pispino >=1.1

• progressbar2

• python >=3

• rdptools

• requests

• seqkit

• vsearch

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install pipits

and update with:

conda update pipits

or use the docker container:

docker pull quay.io/biocontainers/pipits:<tag>

(see pipits/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pipits/README.html)