recipe pirate

Pangenome analysis and threshold evaluation toolbox

Homepage:

https://github.com/SionBayliss/PIRATE

License:

GPL / GPL3

Recipe:

/pirate/meta.yaml

Links:

biotools: pirate, doi: 10.1101/598391

package pirate

Versions:

1.0.5-0,  1.0.4-2,  1.0.4-1,  1.0.4-0,  1.0.3-2,  1.0.3-1,  1.0.3-0,  1.0.2-1,  1.0.2-0

Depends:

• blast >=2.2.31

• cd-hit >=4.7

• diamond >=0.9.14

• fasttree >=2.1.10

• mafft >=7.310

• mcl >=14.137

• parallel >=20170422

• perl-bioperl >=1.7.2

• r-dplyr

• r-ggplot2

• unzip

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install pirate

and update with:

conda update pirate

or use the docker container:

docker pull quay.io/biocontainers/pirate:<tag>

(see pirate/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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