recipe piret

A tool for conducting RNA seq analysis.

Homepage:

https://github.com/mshakya/PyPiReT

License:

GPLV2

Recipe:

/piret/meta.yaml

Links:

biotools: piret

package piret

Versions:

0.3.4-1,  0.3.4-0

Depends:

• argparse

• bamtools >=2.4.0

• bioconductor-deseq2 >=1.20.0

• bioconductor-edger >=3.22.5

• biopython >=1.7.0

• hisat2 >=2.0.5

• luigi >=2.7.9

• pandas >=0.23.4

• plumbum >=1.6.0

• python

• r

• samtools >=1.3.1

• stringtie >=1.3.3

• subread >=1.5.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install piret

and update with:

conda update piret

or use the docker container:

docker pull quay.io/biocontainers/piret:<tag>

(see piret/tags for valid values for <tag>)

Download stats

Link to this page

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