recipe pirs

pIRS is a program for simulating Illumina PE reads.






package pirs

(downloads) docker_pirs



depends boost:


depends bwa:

depends coreutils:

depends gnuplot:

depends libgcc-ng:


depends libgfortran-ng:

depends libgfortran5:


depends libstdcxx-ng:


depends libzlib:


depends perl:

depends samtools:

depends soapaligner:

depends soapcoverage:

depends zlib:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pirs

and update with::

   mamba update pirs

To create a new environment, run:

mamba create --name myenvname pirs

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `pirs/tags`_ for valid values for ``<tag>``)

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