recipe plannotate

Webserver and command line tool for annotating engineered plasmids

Homepage:

https://github.com/mmcguffi/pLannotate

License:

GPL-3.0-or-later

Recipe:

/plannotate/meta.yaml

package plannotate

versions:

1.2.2-0,  1.2.1-0,  1.2.0-4,  1.2.0-3,  1.2.0-2,  1.2.0-1,  1.2.0-0

depends altair:

4.2.*

depends biopython:

>=1.78

depends blast:

>=2.10.1

depends bokeh:

2.4.1.*

depends click:

depends curl:

depends diamond:

>=2.0.13

depends numpy:

depends pandas:

>=1.3.5,<2.0.0

depends python:

>=3.9

depends ripgrep:

>=13.0.0

depends streamlit:

1.8.1.*

depends tabulate:

>=0.8.9

depends trnascan-se:

>=2.0.7

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install plannotate

and update with::

   mamba update plannotate

To create a new environment, run:

mamba create --name myenvname plannotate

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/plannotate:<tag>

(see `plannotate/tags`_ for valid values for ``<tag>``)

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Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/plannotate/README.html)