recipe plasflow

PlasFlow - predicting plasmid sequences in metagenomic data

Homepage

https://github.com/smaegol/PlasFlow

License

GPL3 / GNU General Public v3 or later (GPLv3+)

Recipe

/plasflow/meta.yaml

Links

doi: 10.1093/nar/gkx1321

package plasflow

(downloads) docker_plasflow

Versions

1.1.0-0

Depends bioconductor-biostrings

Depends biopython

Depends numpy

Depends pandas

Depends python

>=3.5,<3.6.0a0

Depends rpy2

Depends scikit-learn

Depends scipy

Depends tensorflow

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install plasflow

and update with:

conda update plasflow

or use the docker container:

docker pull quay.io/biocontainers/plasflow:<tag>

(see plasflow/tags for valid values for <tag>)