recipe plasflow

PlasFlow - predicting plasmid sequences in metagenomic data

Homepage:

https://github.com/smaegol/PlasFlow

License:

GPL3 / GNU General Public v3 or later (GPLv3+)

Recipe:

/plasflow/meta.yaml

Links:

doi: 10.1093/nar/gkx1321

package plasflow

versions:

1.1.0-0

depends bioconductor-biostrings:

depends biopython:

depends numpy:

depends pandas:

depends python:

>=3.5,<3.6.0a0

depends rpy2:

depends scikit-learn:

depends scipy:

depends tensorflow:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install plasflow

and update with::

   mamba update plasflow

To create a new environment, run:

mamba create --name myenvname plasflow

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/plasflow:<tag>

(see `plasflow/tags`_ for valid values for ``<tag>``)

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