recipe plasmidcommunity

Klebsiella pneumoniae Plasmid Classification, Assignment, and Transmission Risk Prediction

Homepage:

https://github.com/wuxinmiao5/PlasmidCommunity

Documentation:

https://github.com/wuxinmiao5/PlasmidCommunity/blob/main/README.md

License:

GPL-3.0

Recipe:

/plasmidcommunity/meta.yaml

package plasmidcommunity

versions:

1.0.2-0

depends bash:

depends bioconductor-biostrings:

>=2.70.3

depends blast:

>=2.1.2

depends fastani:

>=1.33

depends prodigal:

>=2.6.3

depends r-base:

>=4.4,<4.5.0a0

depends r-readr:

>=2.1.5

depends r-readxl:

>=1.4.3

depends r-seqinr:

>=4.2.36

depends r-tidyverse:

>=2.0.0

depends util-linux:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install plasmidcommunity

and update with::

   mamba update plasmidcommunity

To create a new environment, run:

mamba create --name myenvname plasmidcommunity

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/plasmidcommunity:<tag>

(see `plasmidcommunity/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/plasmidcommunity/README.html)