recipe plass

Plass (Protein-Level ASSembler) and PenguiN (Protein-guided Nucleotide assembler) are methods to assemble short read sequencing data on a protein level to proteins or DNA contigs

Homepage:

https://github.com/soedinglab/plass

License:

GPLv3

Recipe:

/plass/meta.yaml

Links:

doi: 10.1038/s41592-019-0437-4, doi: 10.1101/2024.03.29.587318, biotools: plass

package plass

versions:

5.cf8933-1,  5.cf8933-0,  4.687d7-5,  4.687d7-4,  4.687d7-3,  4.687d7-2,  4.687d7-1,  4.687d7-0,  3.764a3-0, 

5.cf8933-1,  5.cf8933-0,  4.687d7-5,  4.687d7-4,  4.687d7-3,  4.687d7-2,  4.687d7-1,  4.687d7-0,  3.764a3-0,  2.c7e35-1

depends _openmp_mutex:

>=4.5

depends bzip2:

>=1.0.8,<2.0a0

depends gawk:

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<2.0a0

depends perl:

>=5.32.1,<5.33.0a0 *_perl5

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install plass

and update with::

   mamba update plass

To create a new environment, run:

mamba create --name myenvname plass

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/plass:<tag>

(see `plass/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

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