recipe pling

Pling computes the rearrangement distance between plasmids and clusters on their basis

Homepage:

https://github.com/iqbal-lab-org/pling

License:

MIT / LICENSE

Recipe:

/pling/meta.yaml

package pling

versions:

2.0.0-0

depends dingii:

depends glpk:

>=5.0

depends intervaltree:

>=3.0.2

depends mummer:

>=3.23

depends numpy:

>=1.26.0

depends pandas:

>=1.5.3

depends plasnet:

>=0.6.0

depends python:

>=3.9,<3.12

depends snakemake:

>=7.25.4,<8.0.0

depends sourmash:

>=4.4.0,<5.0.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pling

and update with::

   mamba update pling

To create a new environment, run:

mamba create --name myenvname pling

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pling:<tag>

(see `pling/tags`_ for valid values for ``<tag>``)

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Link to this page

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