recipe plink2

Whole genome association analysis toolset

Homepage:

https://www.cog-genomics.org/plink2

License:

GPL-3

Recipe:

/plink2/meta.yaml

Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner.

package plink2

(downloads) docker_plink2

versions:
2.00a5.12-1,  2.00a5.12-0,  2.00a5.10-0,  2.00a5-0,  2.00a3.7-4,  2.00a3.7-3,  2.00a3.7-2,  2.00a3.7-1,  2.00a3.7-0, 

2.00a5.12-1,  2.00a5.12-0,  2.00a5.10-0,  2.00a5-0,  2.00a3.7-4,  2.00a3.7-3,  2.00a3.7-2,  2.00a3.7-1,  2.00a3.7-0,  2.00a3.3-0,  2.00a2.3-2,  2.00a2.3-1,  2.00a2.3-0,  1.90b3.35-0

depends libgcc:

>=13

depends libstdcxx:

>=13

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install plink2

and update with::

   mamba update plink2

To create a new environment, run:

mamba create --name myenvname plink2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/plink2:<tag>

(see `plink2/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/plink2/README.html)