recipe pmultiqc

Python package for quality control of proteomics datasets, based on multiqc package

Homepage:

https://github.com/bigbio/pmultiqc/

License:

MIT / MIT

Recipe:

/pmultiqc/meta.yaml

package pmultiqc

(downloads) docker_pmultiqc

versions:
0.0.25-0,  0.0.24-0,  0.0.23-0,  0.0.22-0,  0.0.21-0,  0.0.20-0,  0.0.19-0,  0.0.18-0,  0.0.17-0, 

0.0.25-0,  0.0.24-0,  0.0.23-0,  0.0.22-0,  0.0.21-0,  0.0.20-0,  0.0.19-0,  0.0.18-0,  0.0.17-0,  0.0.16-0,  0.0.15-0,  0.0.14-0,  0.0.13-0,  0.0.12-0,  0.0.11-0,  0.0.10-0,  0.0.9-0,  0.0.8-0,  0.0.7-0,  0.0.5-0,  0.0.4-0

depends lxml:

depends multiqc:

1.23

depends numpy:

>=1.23

depends pandas:

depends pyopenms:

>2.7

depends pyteomics:

depends pytest:

depends python:

>=3.6

depends sdrf-pipelines:

>=0.0.28

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pmultiqc

and update with::

   mamba update pmultiqc

To create a new environment, run:

mamba create --name myenvname pmultiqc

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pmultiqc:<tag>

(see `pmultiqc/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pmultiqc/README.html)