recipe poly-qtlseq

PolyploidQtlSeq is a program that extends QTL-seq for polyploid F1 populations.

Homepage:

https://github.com/TatsumiMizubayashi/PolyploidQtlSeq

License:

MIT License

Recipe:

/poly-qtlseq/meta.yaml

package poly-qtlseq

versions:

1.0.1-0,  1.0.0-0

depends bcftools:

>=1.16

depends bwa:

depends dotnet-runtime:

>=6,<7

depends fastp:

>=0.23

depends samtools:

>=1.16

depends snpeff:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install poly-qtlseq

and update with::

   mamba update poly-qtlseq

To create a new environment, run:

mamba create --name myenvname poly-qtlseq

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/poly-qtlseq:<tag>

(see `poly-qtlseq/tags`_ for valid values for ``<tag>``)

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Link to this page

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