recipe polymutt

Li B, Chen W, Zhan X, Busonero F, Sanna S, et al. (2012) A Likelihood-Based Framework for Variant Calling and De Novo Mutation Detection in Families. PLoS Genet 8(10): e1002944. doi:10.1371/journal.pgen.1002944

Homepage:

https://genome.sph.umich.edu/wiki/Polymutt

License:

custom (written permission by author to publish on bioconda)

Recipe:

/polymutt/meta.yaml

package polymutt

(downloads) docker_polymutt

versions:

0.18-0

depends bzip2:

1.0*

depends libgcc:

depends openmp:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install polymutt

and update with::

   mamba update polymutt

To create a new environment, run:

mamba create --name myenvname polymutt

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/polymutt:<tag>

(see `polymutt/tags`_ for valid values for ``<tag>``)

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Link to this page

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