recipe poolsnp

PoolSNP is a heuristic SNP caller, which uses an MPILEUP file and a reference genome in FASTA format as inputs.

Homepage:

https://github.com/capoony/PoolSNP

License:

Apache-2.0

Recipe:

/poolsnp/meta.yaml

package poolsnp

(downloads) docker_poolsnp

versions:

1.0.1-0,  1.0.0-0

depends parallel:

depends python:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install poolsnp

and update with::

   mamba update poolsnp

To create a new environment, run:

mamba create --name myenvname poolsnp

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/poolsnp:<tag>

(see `poolsnp/tags`_ for valid values for ``<tag>``)

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Link to this page

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