recipe popgen-entropy

This program is for inferring population structure from autopolyploid and mixed-ploidy individuals, similar to structure, for low- to medium-coverage sequencing depth.

Homepage:

https://bitbucket.org/buerklelab/mixedploidy-entropy/src/master/

License:

GPLv3

Recipe:

/popgen-entropy/meta.yaml

Links:

biotools: popgen-entropy, doi: 10.1101/2020.07.31.231514

entropy performs model-based genotype and ancestry estimation software for detecting hybridization in mixed-ploidy species using genotype-likelihood data as input. Information about the model and testing can be found in the pre-print at [bioRxiv](https://biorxiv.org/content/10.1101/2020.07.31.231514v1). The vignette_entropy.pdf file in the Bitbucket repo contains instructions on how to process and analyze genomic data.

package popgen-entropy

(downloads) docker_popgen-entropy

versions:

2.0-8,  2.0-7,  2.0-6,  2.0-5,  2.0-4,  2.0-3,  2.0-2,  2.0-1,  2.0-0

depends gsl:

>=2.7,<2.8.0a0

depends hdf5:

>=1.12.2,<1.12.3.0a0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends mkl:

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install popgen-entropy

and update with::

   mamba update popgen-entropy

To create a new environment, run:

mamba create --name myenvname popgen-entropy

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/popgen-entropy:<tag>

(see `popgen-entropy/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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