recipe popoolation2

PoPoolation2 allows to compare allele frequencies for SNPs between two or more populations and to identify significant differences.

Homepage:

https://sourceforge.net/projects/popoolation2

License:

BSD / BSD-3

Recipe:

/popoolation2/meta.yaml

Links:

doi: 10.1093/bioinformatics/btr589

package popoolation2

versions:

1.201-0

depends bwa:

depends igv:

depends openjdk:

depends perl:

>=5.32.1,<6.0a0 *_perl5

depends perl-text-nsp:

depends python:

depends r-base:

depends samtools:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install popoolation2

and update with::

   mamba update popoolation2

To create a new environment, run:

mamba create --name myenvname popoolation2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/popoolation2:<tag>

(see `popoolation2/tags`_ for valid values for ``<tag>``)

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