recipe porechop_abi

Adapter inferrence and removal of Oxford Nanopore reads

Homepage:

https://github.com/bonsai-team/Porechop_ABI

License:

GPL3

Recipe:

/porechop_abi/meta.yaml

package porechop_abi

versions:

0.5.0-5,  0.5.0-4,  0.5.0-3,  0.5.0-2,  0.5.0-1,  0.5.0-0

depends _openmp_mutex:

>=4.5

depends libgcc:

>=13

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends networkx:

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends zlib:

requirements:

additional platforms:

linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install porechop_abi

and update with::

   mamba update porechop_abi

To create a new environment, run:

mamba create --name myenvname porechop_abi

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/porechop_abi:<tag>

(see `porechop_abi/tags`_ for valid values for ``<tag>``)

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