recipe poretools

poretools: a toolkit for working with nanopore sequencing data from Oxford Nanopore

Homepage:

http://poretools.readthedocs.org/en/latest/

License:

MIT

Recipe:

/poretools/meta.yaml

package poretools

(downloads) docker_poretools

versions:
0.6.1a1-8,  0.6.1a1-7,  0.6.1a1-6,  0.6.1a1-5,  0.6.1a1-4,  0.6.1a1-3,  0.6.1a0-0,  0.6.0-0,  0.5.1-1, 

0.6.1a1-8,  0.6.1a1-7,  0.6.1a1-6,  0.6.1a1-5,  0.6.1a1-4,  0.6.1a1-3,  0.6.1a0-0,  0.6.0-0,  0.5.1-1,  0.5.1-0,  0.5.0-0

depends h5py:

>=2.2.0

depends hdf5:

depends matplotlib:

depends pandas:

depends python:

<3

depends seaborn:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install poretools

and update with::

   mamba update poretools

To create a new environment, run:

mamba create --name myenvname poretools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/poretools:<tag>

(see `poretools/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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