recipe preseq

predicting library complexity and genome coverage in high-throughput sequencing

Homepage:

https://github.com/smithlabcode/preseq

Documentation:

https://preseq.readthedocs.io/

License:

GPL-3.0-or-later

Recipe:

/preseq/meta.yaml

package preseq

versions:

3.2.0-7,  3.2.0-6,  3.2.0-5,  3.2.0-4,  3.2.0-3,  3.2.0-2,  3.2.0-1,  3.2.0-0,  3.1.2-3, 

3.2.0-7,  3.2.0-6,  3.2.0-5,  3.2.0-4,  3.2.0-3,  3.2.0-2,  3.2.0-1,  3.2.0-0,  3.1.2-3,  3.1.2-2,  3.1.2-1,  3.1.2-0,  2.0.3-5,  2.0.3-4,  2.0.3-3,  2.0.3-2,  2.0.3-1,  2.0.3-0,  2.0.2-0

depends htslib:

>=1.21,<1.22.0a0

depends libcxx:

>=18

depends libzlib:

>=1.3.1,<2.0a0

depends zlib:

requirements:

additional platforms:

linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install preseq

and update with::

   mamba update preseq

To create a new environment, run:

mamba create --name myenvname preseq

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/preseq:<tag>

(see `preseq/tags`_ for valid values for ``<tag>``)

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