recipe pretext-suite

Meta-package for Pretext Hi-C contact map tools.

Homepage:

https://github.com/wtsi-hpag/

License:

MIT / MIT

Recipe:

/pretext-suite/meta.yaml

A collection of the Pretext Hi-C genome contact map tools. Developed by the High-Performance Assembly Group, Wellcome Sanger Institute, UK.

package pretext-suite

(downloads) docker_pretext-suite

versions:

0.0.2-1,  0.0.2-0,  0.0.1-0

depends pretextgraph:

depends pretextmap:

depends pretextsnapshot:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pretext-suite

and update with::

   mamba update pretext-suite

To create a new environment, run:

mamba create --name myenvname pretext-suite

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pretext-suite:<tag>

(see `pretext-suite/tags`_ for valid values for ``<tag>``)

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Link to this page

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