recipe pretextsnapshot

Commandline image generator for Pretext Hi-C genome contact maps.

Homepage:

https://github.com/wtsi-hpag/PretextSnapshot

License:

MIT / MIT

Recipe:

/pretextsnapshot/meta.yaml

This is a tool for generating images (png, bmp or jpeg) of Hi-C contact maps in the Pretext format. See https://github.com/wtsi-hpag/PretextMap for how to generate Pretext contact maps, or search for pretextmap on bioconda.

package pretextsnapshot

(downloads) docker_pretextsnapshot

versions:

0.0.4-3,  0.0.4-2,  0.0.4-1,  0.0.4-0,  0.0.3-1,  0.0.3-0,  0.0.2-1,  0.0.2-0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pretextsnapshot

and update with::

   mamba update pretextsnapshot

To create a new environment, run:

mamba create --name myenvname pretextsnapshot

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pretextsnapshot:<tag>

(see `pretextsnapshot/tags`_ for valid values for ``<tag>``)

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