recipe primalscheme

primalscheme is a tool for designing primer panels for multiplex PCR

Homepage:

https://github.com/aresti/primalscheme

License:

GPL3 / GPL-3

Recipe:

/primalscheme/meta.yaml

Links:

doi: 10.1038/nprot.2017.066

package primalscheme

versions:

1.4.1-0,  1.4.0-0,  1.3.2-0

depends biopython:

>=1,<2

depends click:

>=8.1.3

depends parasail-python:

>=1.2

depends primer3-py:

>=0,<1

depends progress:

>=1.5

depends python:

depends reportlab:

>=3,<4

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install primalscheme

and update with::

   mamba update primalscheme

To create a new environment, run:

mamba create --name myenvname primalscheme

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/primalscheme:<tag>

(see `primalscheme/tags`_ for valid values for ``<tag>``)

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