recipe primer3

Design PCR primers from DNA sequence. From mispriming libraries to sequence quality data to the generation of internal oligos, primer3 does it.

Homepage:

https://github.com/primer3-org/primer3

License:

GPLv2

Recipe:

/primer3/meta.yaml

Links:

biotools: primer3, doi: 10.1093/nar/gks596

package primer3

(downloads) docker_primer3

versions:
2.6.1-7,  2.6.1-6,  2.6.1-5,  2.6.1-4,  2.6.1-3,  2.6.1-2,  2.6.1-1,  2.6.1-0,  2.6.0-1, 

2.6.1-7,  2.6.1-6,  2.6.1-5,  2.6.1-4,  2.6.1-3,  2.6.1-2,  2.6.1-1,  2.6.1-0,  2.6.0-1,  2.6.0-0,  2.5.0-1,  2.5.0-0,  2.4.1a-2,  2.4.1a-1,  2.4.1a-0,  2.4.0-0,  2.3.7-1,  2.3.7-0,  2.0.0a-8,  2.0.0a-7,  2.0.0a-6,  2.0.0a-5,  2.0.0a-4,  2.0.0a-3,  2.0.0a-2,  2.0.0a-1,  2.0.0a-0,  1.1.4-7,  1.1.4-6,  1.1.4-5,  1.1.4-4,  1.1.4-3,  1.1.4-2,  1.1.4-1,  1.1.4-0,  v2.5.0-0

depends libgcc:

>=13

depends libstdcxx:

>=13

depends perl:

>=5.32.1,<5.33.0a0 *_perl5

requirements:

additional platforms:
linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install primer3

and update with::

   mamba update primer3

To create a new environment, run:

mamba create --name myenvname primer3

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/primer3:<tag>

(see `primer3/tags`_ for valid values for ``<tag>``)

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