recipe probeit

Probeit: a probe designer for detecting and genotyping pathogen!!!

Homepage:

https://github.com/steineggerlab/probeit

License:

AGPL-3.0

Recipe:

/probeit/meta.yaml

package probeit

Versions:

2.2-2,  2.2-1,  2.2-0,  2.0-0,  v1.9-1,  v1.9-0

Depends:

• bedtools

• biopython

• genmap

• libgcc-ng >=12

• libstdcxx-ng >=12

• mmseqs2 >=13.45111

• numpy

• pandas

• primer3-py

• python >=3.10,<3.11.0a0

• python_abi 3.10.* *_cp310

• seqkit

• setuptools

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install probeit

and update with:

conda update probeit

or use the docker container:

docker pull quay.io/biocontainers/probeit:<tag>

(see probeit/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/probeit/README.html)