recipe prodigal

Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program

Homepage:

http://prodigal.ornl.gov/

License:

GPL v3

Recipe:

/prodigal/meta.yaml

package prodigal

Versions:

2.6.3-6,  2.6.3-5,  2.6.3-4,  2.6.3-3,  2.6.3-2,  2.6.3-1,  2.6.3-0,  2.6.2-3,  2.6.2-2, 

2.6.3-6,  2.6.3-5,  2.6.3-4,  2.6.3-3,  2.6.3-2,  2.6.3-1,  2.6.3-0,  2.6.2-3,  2.6.2-2,  2.6.2-1

Depends:

• libgcc-ng >=12

Required By:

• cat

• autometa

• semibin

• phigaro

• pprodigal

• lorikeet-genome

• gunc

• bioprov

• magpurify

• mercat

• pynteny

• antismash

• dbcan

• iphop

• drep

• ngless

• panacota

• milonga

• prokka

• iqkm

• dram

• antismash-lite

• stag

• checkm2

• viralflye

• whokaryote

• viralverify

• gtotree

• datma

• metachip

• marvd2

• refinem

• enrichm

• genview

• taranis

• busco

• mdmcleaner

• treesapp

• find_differential_primers

• zol

• metabinner

• eggnog-mapper

• emeraldbgc

• hicap

• checkm-genome

• ezaai

• das_tool

• metawatt

• comparem

• deepbgc

• gmgc-mapper

• perl-bio-automatedannotation

• chewbbaca

• circlator

• ppanggolin

• rgi

• strainflye

• pygmes

• anvio

• fegenie

• integron_finder

• mercat2

• sanntis

• vrhyme

• vibrant

• platon

• fargene

• pylprotpredictor

• reparation_blast

• metacerberus

• dfast_qc

• gtdbtk

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install prodigal

and update with:

conda update prodigal

or use the docker container:

docker pull quay.io/biocontainers/prodigal:<tag>

(see prodigal/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/prodigal/README.html)