recipe prodigal

Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program

Homepage

http://prodigal.ornl.gov/

License

GPL v3

Recipe

/prodigal/meta.yaml

package prodigal

Versions

2.6.3-4,  2.6.3-3,  2.6.3-2,  2.6.3-1,  2.6.3-0,  2.6.2-3,  2.6.2-2,  2.6.2-1

Depends

• libgcc-ng >=10.3.0

Required By

• checkv

• metachip

• phigaro

• reparation_blast

• pylprotpredictor

• rgi

• drep

• pygmes

• circlator

• gmgc-mapper

• mdmcleaner

• platon

• datma

• integron_finder

• autometa

• busco

• ppanggolin

• hicap

• antismash

• metabinner

• find_differential_primers

• chewbbaca

• gtdbtk

• genview

• das_tool

• pprodigal

• lorikeet-genome

• metacerberus

• checkm-genome

• viralverify

• vibrant

• emeraldbgc

• fargene

• treesapp

• cat

• taranis

• antismash-lite

• bakta

• iqkm

• magpurify

• dfast_qc

• enrichm

• perl-bio-automatedannotation

• gunc

• bioprov

• comparem

• refinem

• panacota

• eggnog-mapper

• deepbgc

• semibin

• dram

• run-dbcan

• mercat

• metawatt

• anvio

• prokka

• fegenie

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install prodigal

and update with:

conda update prodigal

or use the docker container:

docker pull quay.io/biocontainers/prodigal:<tag>

(see prodigal/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/prodigal/README.html)