recipe profile_dists

Profile Dists: Rapid calcualtion of allele profile distances and distance base querying

Homepage:

https://pypi.org/project/profile-dists

Developer docs:

https://github.com/phac-nml/profile_dists/

License:

Apache-2.0

Recipe:

/profile_dists/meta.yaml

package profile_dists

versions:

1.0.1-0,  1.0.0-0

depends fastparquet:

>=2023.4.0

depends numba:

depends numpy:

depends pandas:

>=2.0.2

depends psutil:

depends pyarrow:

>=12.0.0

depends pytables:

>=3.8.0

depends python:

>=3.8,<3.12

depends six:

>=1.16.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install profile_dists

and update with::

   mamba update profile_dists

To create a new environment, run:

mamba create --name myenvname profile_dists

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/profile_dists:<tag>

(see `profile_dists/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/profile_dists/README.html)