recipe proksee

Proksee is a suite of command line tools for performing assembly, annotation and visualization of microbial genomes.

Homepage:

https://github.com/proksee-project/proksee-cmd

License:

Apache License, Version 2.0

Recipe:

/proksee/meta.yaml

package proksee

Versions:

1.0.0a6-0,  1.0.0a5-0,  1.0.0a4-0,  1.0.0a3-0,  1.0.0a2-0,  1.0.0a1-0

Depends:

• click

• fastp 0.22.0.*

• joblib 1.0.1.*

• mash

• numpy 1.19.5.*

• python 3.7.*

• quast 5.0.2.*

• scikit-learn 0.24.1.*

• scipy

• skesa

• spades

• wget

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install proksee

and update with:

conda update proksee

or use the docker container:

docker pull quay.io/biocontainers/proksee:<tag>

(see proksee/tags for valid values for <tag>)

Download stats

Link to this page

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