recipe proksee

Proksee is a suite of command line tools for performing assembly, annotation and visualization of microbial genomes.

Homepage:

https://github.com/proksee-project/proksee-cmd

License:

Apache License, Version 2.0

Recipe:

/proksee/meta.yaml

package proksee

versions:

1.0.0a6-0,  1.0.0a5-0,  1.0.0a4-0,  1.0.0a3-0,  1.0.0a2-0,  1.0.0a1-0

depends click:

depends fastp:

0.22.0.*

depends joblib:

1.0.1.*

depends mash:

depends numpy:

1.19.5.*

depends python:

3.7.*

depends quast:

5.0.2.*

depends scikit-learn:

0.24.1.*

depends scipy:

depends skesa:

depends spades:

depends wget:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install proksee

and update with::

   mamba update proksee

To create a new environment, run:

mamba create --name myenvname proksee

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/proksee:<tag>

(see `proksee/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

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